STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01725COG1454 Alcohol dehydrogenase, class IV. (426 aa)    
Predicted Functional Partners:
RAM_01720
Thioesterase superfamily protein; COG0824 Predicted thioesterase.
 
   
 0.838
IlvB
Acetolactate synthase I/II/III large subunit; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.
     
 0.550
RAM_16640
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
 0.544
RAM_43205
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
 0.544
kgd
Alpha-ketoglutarate decarboxylase; COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
   
  
 0.489
KorA
COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
  
  
 0.462
Adh
COG1064 Zn-dependent alcohol dehydrogenases.
  
 
 0.452
Adh-2
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
  
 
 0.452
Adh-4
COG1064 Zn-dependent alcohol dehydrogenases.
  
 
 0.452
Adh-5
COG1064 Zn-dependent alcohol dehydrogenases.
  
 
 0.452
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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