STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01770ABC transporter substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family. (314 aa)    
Predicted Functional Partners:
RAM_01765
Hypothetical protein.
 
  
 0.953
RAM_01775
Protein kinase; COG0515 Serine/threonine protein kinase.
 
  
 0.929
RAM_12010
COG0765 ABC-type amino acid transport system, permease component.
 
 
 0.850
RAM_12005
COG0765 ABC-type amino acid transport system, permease component.
 
 
 0.848
RAM_30010
COG0515 Serine/threonine protein kinase.
 
  
 0.839
RAM_46485
COG0765 ABC-type amino acid transport system, permease component.
 
 
 0.837
RAM_07620
COG0765 ABC-type amino acid transport system, permease component.
 
 
 0.834
RAM_12020
COG1126 ABC-type polar amino acid transport system, ATPase component.
 
 
 0.833
RAM_47225
COG0765 ABC-type amino acid transport system, permease component.
 
 
 0.831
RAM_07625
COG1126 ABC-type polar amino acid transport system, ATPase component.
 
 
 0.816
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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