STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01785Hypothetical protein. (258 aa)    
Predicted Functional Partners:
RAM_47880
NAD:arginine ADP-ribosyltransferase with a RelA/SpoT domain; COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases.
  
     0.759
RAM_47895
Probable ADP-ribosylglycohydrolase.
  
     0.748
RAM_01110
Hypothetical protein.
  
     0.698
RAM_02150
Hypothetical protein.
  
     0.668
RAM_21360
Phosphatase.
  
     0.645
RAM_38500
Hypothetical protein.
  
     0.588
RAM_39040
Hypothetical protein.
  
     0.579
RAM_22615
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
     0.577
RAM_11355
Hypothetical protein.
  
     0.572
RAM_15540
Phosphatase; COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.569
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.