STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01790Integrase/recombinase; COG0582 Integrase; Belongs to the 'phage' integrase family. (448 aa)    
Predicted Functional Partners:
RAM_01795
Hypothetical protein.
     
 0.768
RAM_25750
COG0582 Integrase.
 
   
 0.643
RAM_01800
Hypothetical protein.
 
     0.632
RAM_25710
Phage integrase-like protein; COG0582 Integrase.
  
     0.578
RAM_01855
TraJ; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
   
 0.552
FtsK-4
Cell division FtsK/SpoIIIE; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
   
 0.500
RAM_29600
Recombinase; COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
  
 0.454
whiA
Putative sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
    0.453
RAM_00060
Hypothetical protein.
 
     0.428
RecQ-3
COG0514 Superfamily II DNA helicase.
  
  
 0.427
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.