STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01885Sporulation and cell division protein SsgA. (126 aa)    
Predicted Functional Partners:
RAM_01890
DNA hydrolase; COG1051 ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.
       0.773
RAM_13950
COG1396 Predicted transcriptional regulators.
  
   
 0.729
RAM_26550
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.694
RAM_14550
Hypothetical protein.
  
     0.639
RAM_33975
Hypothetical protein; COG0295 Cytidine deaminase.
  
     0.604
RAM_18340
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
  
     0.588
RAM_01465
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.581
RAM_46230
Hypothetical protein.
  
     0.557
RAM_30380
COG1396 Predicted transcriptional regulators.
  
     0.538
RAM_01895
Hypothetical protein.
       0.527
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.