STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01945COG0500 SAM-dependent methyltransferases. (195 aa)    
Predicted Functional Partners:
RAM_02975
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
 
 
 0.561
RAM_34280
Methyltransferase; COG0500 SAM-dependent methyltransferases.
 
 
 0.488
RAM_01950
COG3795 Uncharacterized protein conserved in bacteria.
       0.480
RAM_41555
Protein phosphatase; COG4639 Predicted kinase.
   
   0.474
RAM_40785
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
 
 
 0.471
Nat
COG2162 Arylamine N-acetyltransferase; Belongs to the arylamine N-acetyltransferase family.
       0.420
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.407
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.407
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.407
UbiE-2
COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
 
 
 0.401
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.