STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01965Hypothetical protein. (234 aa)    
Predicted Functional Partners:
RAM_34680
Hypothetical protein.
  
     0.648
RAM_44005
Lipoprotein.
  
     0.607
RAM_01435
COG3584 Uncharacterized protein conserved in bacteria.
  
     0.587
RAM_33330
Peptidase M48; COG0501 Zn-dependent protease with chaperone function.
  
     0.586
RAM_01960
Signal transduction protein containing EAL, PAS and GGDEF domain; COG2202 FOG: PAS/PAC domain.
       0.584
RAM_02800
Hypothetical protein.
  
     0.541
RAM_25050
Phosphotriesterase-family protein; COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold.
  
     0.524
RAM_30480
Phosphoesterase.
  
     0.524
RAM_01970
Hypothetical protein.
       0.500
RAM_40010
Hypothetical protein.
  
     0.500
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.