STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HcaDferredoxin--NAD+ reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases. (404 aa)    
Predicted Functional Partners:
HcaC
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
  
 
 0.937
HcaC-2
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
  
 
 0.937
RAM_09290
Ferredoxin reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
  
  
 
0.916
RAM_22320
Ferredoxin reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
  
  
 
0.913
NasA
Nitrate reductase catalytic subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.771
RAM_32810
Alkane 1-monooxygenase; COG1773 Rubredoxin.
 
 
 0.655
RAM_33635
Hypothetical protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.632
RAM_23305
Formate dehydrogenase, alpha subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.614
RAM_02000
COG1414 Transcriptional regulator.
       0.605
MetE
5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase; COG0620 Methionine synthase II (cobalamin-independent).
       0.539
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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