STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HcaDferredoxin--NAD+ reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases. (404 aa)    
Predicted Functional Partners:
HcaC
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
  
 0.947
HcaC-2
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
  
 0.947
RAM_09290
Ferredoxin reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
  
  
 
0.916
RAM_22320
Ferredoxin reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
  
  
 
0.913
NasA
Nitrate reductase catalytic subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.774
RAM_32810
Alkane 1-monooxygenase; COG1773 Rubredoxin.
 
 
 0.710
RAM_33635
Hypothetical protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.635
RAM_23305
Formate dehydrogenase, alpha subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.618
RAM_02000
COG1414 Transcriptional regulator.
       0.605
NasD
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 
 
 0.571
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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