STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02070Hypothetical protein. (380 aa)    
Predicted Functional Partners:
RAM_02080
Hypothetical protein.
 
     0.948
RAM_02065
Hypothetical protein.
       0.831
RAM_02075
Hypothetical protein.
       0.787
RAM_30740
Hypothetical protein.
  
     0.732
RAM_41805
Hypothetical protein; COG2367 Beta-lactamase class A.
  
     0.723
RAM_30735
Hypothetical protein.
  
     0.694
RAM_25300
Hypothetical protein.
  
     0.656
RAM_44440
alpha-L-fucosidase/alpha-galactosidase.
  
     0.636
RAM_47285
COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
     0.627
AlgL
Lyase precursor.
  
     0.591
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.