STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02110Riboflavin biosynthesis protein RibD; COG0262 Dihydrofolate reductase. (185 aa)    
Predicted Functional Partners:
RAM_19000
Riboflavin biosynthesis protein RibD.
  
     0.768
RAM_46000
Hypothetical protein; COG0262 Dihydrofolate reductase.
 
     0.706
RAM_37745
COG0262 Dihydrofolate reductase.
 
     0.698
DcyD
COG2515 1-aminocyclopropane-1-carboxylate deaminase.
       0.678
RAM_26730
Hypothetical protein; COG0262 Dihydrofolate reductase.
 
     0.673
RAM_26165
Riboflavin biosynthesis protein; COG0262 Dihydrofolate reductase.
 
     0.670
RAM_20320
Hypothetical protein; COG0262 Dihydrofolate reductase.
 
     0.614
YaeR-2
Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases.
 
  
 0.548
RAM_02100
TetR family transcriptional regulator; COG3226 Uncharacterized protein conserved in bacteria.
       0.535
RAM_13555
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
 
  
 0.535
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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