STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02180Hypothetical protein; COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase. (203 aa)    
Predicted Functional Partners:
RAM_02175
COG3809 Uncharacterized protein conserved in bacteria.
 
     0.930
RAM_41800
Surface protein.
  
     0.725
RAM_08060
Hypothetical protein.
  
     0.719
RAM_02170
Hypothetical protein; COG3324 Predicted enzyme related to lactoylglutathione lyase.
       0.618
RAM_25290
Hypothetical protein.
  
     0.568
RAM_25300
Hypothetical protein.
  
     0.561
RAM_13925
Hypothetical protein.
  
     0.531
RAM_23025
Hypothetical protein.
  
     0.500
RAM_41645
Hypothetical protein.
  
     0.496
NrdB-2
COG0208 Ribonucleotide reductase, beta subunit.
 
     0.486
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.