STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02190COG1396 Predicted transcriptional regulators. (139 aa)    
Predicted Functional Partners:
RAM_02195
Membrane spanning protein.
       0.883
RAM_12450
Cyclase/dehydrase.
  
   
 0.754
RAM_06295
APH/ChoK family kinase; COG0661 Predicted unusual protein kinase.
  
     0.730
RAM_02335
Hypothetical protein.
 
     0.702
RAM_02200
Hypothetical protein.
       0.677
RAM_45410
COG0003 Oxyanion-translocating ATPase.
  
     0.673
RAM_02410
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
     0.641
RAM_45415
COG0003 Oxyanion-translocating ATPase.
  
     0.626
GalE-2
UDP-glucose 4-epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
     0.583
RAM_03785
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.551
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.