STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02195Membrane spanning protein. (229 aa)    
Predicted Functional Partners:
RAM_02190
COG1396 Predicted transcriptional regulators.
       0.865
RAM_02200
Hypothetical protein.
 
     0.797
RAM_46950
Hypothetical protein; COG0147 Anthranilate/para-aminobenzoate synthases component I.
  
     0.771
RAM_46665
Hypothetical protein.
  
    0.768
RAM_47930
Glycoprotein.
  
     0.761
RAM_00950
Hypothetical protein.
  
    0.758
RAM_05430
Hypothetical protein.
  
     0.754
RAM_12110
Transmembrane protein.
  
     0.754
RAM_41380
Hypothetical protein.
  
     0.753
RAM_02625
Hypothetical protein.
  
     0.750
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.