STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02250COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein). (306 aa)    
Predicted Functional Partners:
ProW
COG1174 ABC-type proline/glycine betaine transport systems, permease component.
 
 0.989
RAM_02245
COG1174 ABC-type proline/glycine betaine transport systems, permease component.
 
 
 0.988
RAM_00490
COG1125 ABC-type proline/glycine betaine transport systems, ATPase components.
 
 0.985
RAM_40905
COG1125 ABC-type proline/glycine betaine transport systems, ATPase components.
 
 0.985
ProW-2
COG1174 ABC-type proline/glycine betaine transport systems, permease component.
 
 0.978
RAM_40900
COG1174 ABC-type proline/glycine betaine transport systems, permease component.
 
 
 0.977
RAM_00485
COG1174 ABC-type proline/glycine betaine transport systems, permease component.
 
 
 0.974
RAM_00495
COG1174 ABC-type proline/glycine betaine transport systems, permease component.
 
 
 0.972
RAM_00500
COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
  
  
0.929
RAM_40890
COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
  
  
 
0.925
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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