STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02270COG2130 Putative NADP-dependent oxidoreductases. (335 aa)    
Predicted Functional Partners:
RAM_15970
Phosphotransferase; COG3173 Predicted aminoglycoside phosphotransferase.
 
    0.592
RAM_02265
Hypothetical protein.
       0.566
RAM_08420
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
  
 0.482
Qor-16
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
  
 0.482
RAM_35790
COG3173 Predicted aminoglycoside phosphotransferase.
 
    0.465
RAM_36830
Aminoglycoside phosphotransferase; COG0661 Predicted unusual protein kinase.
 
    0.459
RAM_25335
COG0656 Aldo/keto reductases, related to diketogulonate reductase.
   
 
 0.433
RAM_29470
COG0656 Aldo/keto reductases, related to diketogulonate reductase.
   
 
 0.433
RAM_33135
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
   
 
 0.433
RAM_34775
Oxidoreductase; COG0656 Aldo/keto reductases, related to diketogulonate reductase.
   
 
 0.433
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.