STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02295Hypothetical protein. (169 aa)    
Predicted Functional Partners:
RAM_02300
COG0586 Uncharacterized membrane-associated protein.
       0.773
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
       0.712
RAM_02310
Hypothetical protein.
       0.598
RAM_02305
Hypothetical protein.
       0.597
RAM_47465
Dynamin; COG0699 Predicted GTPases (dynamin-related).
  
     0.505
RAM_26800
Hypothetical protein.
  
     0.463
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.456
RAM_11305
Hypothetical protein.
  
     0.426
RAM_14510
Hypothetical protein; COG2200 FOG: EAL domain.
  
   
 0.426
AcpP-5
COG0236 Acyl carrier protein.
  
     0.422
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.