STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02335Hypothetical protein. (170 aa)    
Predicted Functional Partners:
mshA
Glycosyl transferase; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.
 
     0.907
RAM_45225
Hypothetical protein.
  
     0.764
RAM_45410
COG0003 Oxyanion-translocating ATPase.
  
     0.760
RAM_47165
COG1960 Acyl-CoA dehydrogenases.
  
     0.746
RAM_12450
Cyclase/dehydrase.
  
     0.738
RAM_02190
COG1396 Predicted transcriptional regulators.
 
     0.702
RAM_45415
COG0003 Oxyanion-translocating ATPase.
  
     0.697
RAM_46230
Hypothetical protein.
  
     0.675
RAM_02320
Ykud domain-containing protein; COG1376 Uncharacterized protein conserved in bacteria.
 
     0.657
whiB-3
WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.633
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.