STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02350LuxR family transcriptional regulator fused with ATPase domain; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (212 aa)    
Predicted Functional Partners:
RAM_02355
Oxidoreductase; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
     0.672
RAM_38390
COG0640 Predicted transcriptional regulators.
  
    0.485
RAM_18685
COG0640 Predicted transcriptional regulators.
  
    0.480
RAM_28515
Hypothetical protein.
  
   0.452
RAM_43190
Hypothetical protein.
  
    0.451
RAM_43835
Hypothetical protein.
  
   0.446
RAM_30005
COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
     0.422
RAM_39550
Hypothetical protein.
  
   
 0.421
RAM_31725
ArsR family transcriptional regulator.
  
    0.403
SenX
COG0642 Signal transduction histidine kinase.
   
 
 0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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