STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02355Oxidoreductase; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases). (289 aa)    
Predicted Functional Partners:
PdxH
COG0259 Pyridoxamine-phosphate oxidase.
     
  0.900
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
     
  0.900
RAM_02350
LuxR family transcriptional regulator fused with ATPase domain; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
     0.674
RAM_11130
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
  
     0.539
RAM_34775
Oxidoreductase; COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
 
0.494
RAM_29470
COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
 
0.487
RAM_33135
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
 
0.483
RAM_25335
COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
 
0.479
SenX
COG0642 Signal transduction histidine kinase.
       0.450
RegX
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.450
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.