STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02380Xylose isomerase; COG1082 Sugar phosphate isomerases/epimerases. (267 aa)    
Predicted Functional Partners:
RAM_02385
Aromatic compounds degradation protein paaI.
  
    0.840
RAM_02375
Hypothetical protein.
       0.758
RAM_44810
Hypothetical protein.
  
     0.644
RAM_08690
Lysyl tRNA synthetase-like protein.
  
     0.597
RAM_37470
Lysyl tRNA synthetase-like protein.
  
     0.596
RAM_27160
Hypothetical protein.
  
     0.579
RAM_23245
Lysyl tRNA synthetase-like protein.
  
     0.578
RAM_15770
Lysyl tRNA synthetase-like protein.
  
     0.572
IolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; COG3962 Acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.567
RAM_46710
Hypothetical protein.
  
     0.560
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.