STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02455Molybdopterin binding domain-containing oxidoreductase; COG2041 Sulfite oxidase and related enzymes. (518 aa)    
Predicted Functional Partners:
RAM_02450
COG0526 Thiol-disulfide isomerase and thioredoxins.
  
  
 0.598
FadD
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
    0.536
rex
Redox-sensing transcriptional repressor Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
 
   
 0.529
QcrC
COG2010 Cytochrome c, mono- and diheme variants.
   
 
 0.505
MoaB
Molybdenum cofactor biosynthesis protein B; COG0521 Molybdopterin biosynthesis enzymes.
 
   
 0.465
RAM_15020
Hypothetical protein.
 
     0.444
RAM_09775
COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
  
   0.429
RAM_33580
Hypothetical protein; COG3707 Response regulator with putative antiterminator output domain.
  
     0.423
RAM_21370
Two-component system response regulator; COG2203 FOG: GAF domain.
  
     0.419
RAM_28000
Two-component system response regulator; COG2203 FOG: GAF domain.
  
     0.407
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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