STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02510RND family efflux transporter MFP subunit; COG0845 Membrane-fusion protein. (428 aa)    
Predicted Functional Partners:
RAM_02520
COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.977
RAM_02515
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.957
RAM_02525
Hypothetical protein.
 
     0.943
RAM_13105
Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.840
RAM_43445
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.765
RAM_33960
Hypothetical protein.
  
 
 0.753
RAM_33965
Hypothetical protein.
  
 
 0.753
RAM_18025
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.752
RAM_43450
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.552
RAM_02505
Hypothetical protein.
       0.547
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.