STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02565Hypothetical protein. (445 aa)    
Predicted Functional Partners:
ResB
COG1333 ResB protein required for cytochrome c biosynthesis.
 
     0.734
RAM_02560
Cytochrome C assembly membrane protein; COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component.
  
    0.689
RAM_03690
COG4842 Uncharacterized protein conserved in bacteria; Belongs to the WXG100 family.
  
 
 0.654
RAM_43475
Hypothetical protein.
  
  
 0.642
CcdA
COG0785 Cytochrome c biogenesis protein.
       0.637
RAM_16150
Hypothetical protein.
  
 
 0.630
RAM_40500
Hypothetical protein.
  
 
 0.630
RAM_46215
Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
 
   0.488
SigB-2
COG1191 DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family.
 
  
 0.476
RAM_15050
COG3599 Cell division initiation protein.
  
   
 0.454
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.