STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02575MerR family transcriptional regulator; COG2452 Predicted site-specific integrase-resolvase. (70 aa)    
Predicted Functional Partners:
RAM_04995
COG0642 Signal transduction histidine kinase.
  
     0.641
RAM_02570
Hypothetical protein.
       0.628
RAM_02585
Hypothetical protein.
       0.586
CysK
COG0031 Cysteine synthase.
       0.586
RAM_40975
Anti-sigma factor.
  
     0.555
Lrp-2
COG1522 Transcriptional regulators.
       0.519
RAM_05760
COG0210 Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily.
 
    0.483
RAM_31410
COG0500 SAM-dependent methyltransferases.
  
     0.439
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.