STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_02830Oxidoreductase; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases. (725 aa)    
Predicted Functional Partners:
RAM_02815
Exopolysaccharide biosynthesis protein.
 
     0.920
RAM_02835
Hypothetical protein.
 
     0.920
AsnB
COG0367 Asparagine synthase (glutamine-hydrolyzing).
 
   
 0.893
RAM_02840
Lipoprotein.
 
     0.872
RAM_02890
Integral membrane protein.
 
  
 0.825
RAM_02880
Hypothetical protein.
 
     0.818
RAM_02810
COG0438 Glycosyltransferase.
 
  
 0.763
RAM_02855
Integral membrane protein.
 
  
 0.762
AlgD
COG1004 Predicted UDP-glucose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.747
RAM_02885
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
   
 0.746
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.