STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03010COG2030 Acyl dehydratase. (146 aa)    
Predicted Functional Partners:
RAM_03005
COG2030 Acyl dehydratase; Belongs to the UPF0336 family.
 
 
 0.999
rpmG-2
COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.760
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
  
  
 0.726
RAM_10695
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
  
     0.701
FabD
COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
   
 0.692
RAM_44810
Hypothetical protein.
  
   
 0.615
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
  
 0.602
RAM_36880
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
 
 0.600
RAM_08690
Lysyl tRNA synthetase-like protein.
  
   
 0.599
RAM_23245
Lysyl tRNA synthetase-like protein.
  
   
 0.597
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.