STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03110ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component. (390 aa)    
Predicted Functional Partners:
RAM_03080
ABC transporter permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.970
RAM_03075
COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
 
 0.968
RAM_03085
ABC transporter permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.968
RAM_03115
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
  
0.890
RAM_03090
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
  
0.876
RAM_03105
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
  
0.876
RAM_09040
ABC transporter permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.873
RAM_12340
ABC transporter permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.872
RAM_03095
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
  
0.869
RAM_03100
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
  
0.868
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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