STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03130Hypothetical protein. (414 aa)    
Predicted Functional Partners:
RAM_30690
Hemolysin-type calcium-binding protein.
  
   
 0.753
RAM_31450
Hypothetical protein.
  
    0.751
RAM_16970
Hypothetical protein.
  
     0.721
RAM_47895
Probable ADP-ribosylglycohydrolase.
  
     0.686
RAM_02150
Hypothetical protein.
  
    0.671
RAM_21980
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
  
     0.668
RAM_47880
NAD:arginine ADP-ribosyltransferase with a RelA/SpoT domain; COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases.
  
     0.651
RAM_04510
COG2453 Predicted protein-tyrosine phosphatase.
  
 0.649
RAM_01605
Esterase/lipase-like protein; COG0627 Predicted esterase.
  
     0.644
RAM_31505
Hypothetical protein.
  
     0.643
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.