STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RifDCOG3321 Polyketide synthase modules and related proteins. (1728 aa)    
Predicted Functional Partners:
RifC
COG3321 Polyketide synthase modules and related proteins.
 
  
 
0.954
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 0.936
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 0.927
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 0.921
RAM_39095
COG3321 Polyketide synthase modules and related proteins.
 
 
 0.843
RifR
Oleoyl-(acyl-carrier-protein) hydrolase; COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis.
  
 0.824
RAM_31960
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.797
RAM_41785
Thioesterase; COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis.
  
 0.795
RAM_24280
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.793
RAM_32020
COG1020 Non-ribosomal peptide synthetase modules and related proteins; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.792
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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