STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
RifROleoyl-(acyl-carrier-protein) hydrolase; COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis. (250 aa)    
Predicted Functional Partners:
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.984
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.979
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.973
RAM_22825
COG3321 Polyketide synthase modules and related proteins.
  
 0.912
RAM_24435
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.892
RAM_20005
Polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.859
RAM_03305
Acyltransferase PapA5.
  
  
 0.852
RAM_20560
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.836
RifB
COG3321 Polyketide synthase modules and related proteins.
 
  
 0.834
RAM_31965
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.829
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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