STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03320Methyltransferase type 11; Catalyzes the methylation of 27-O-demethylrifamycin SV (DMRSV) to rifamycin SV. (272 aa)    
Predicted Functional Partners:
RAM_03305
Acyltransferase PapA5.
    
 0.936
RAM_03325
COG3959 Transketolase, N-terminal subunit.
       0.744
RAM_03330
COG3958 Transketolase, C-terminal subunit.
       0.744
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.662
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.662
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.662
RAM_00520
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
 
   
 0.558
RAM_02975
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
 
   
 0.497
RAM_03315
COG2124 Cytochrome P450.
       0.444
RAM_13815
Cyclopropane fatty acid synthase/methyltransferase.
 
   
 0.434
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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