STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03405Hypothetical protein. (422 aa)    
Predicted Functional Partners:
RAM_03390
Hypothetical protein.
 
     0.900
RAM_03395
Hypothetical protein.
       0.707
RAM_03400
Hypothetical protein.
       0.707
RAM_41925
NTPase-like protein; COG1192 ATPases involved in chromosome partitioning.
 
     0.670
RAM_38500
Hypothetical protein.
  
     0.593
RAM_41520
Hypothetical protein.
  
     0.589
RAM_03410
Hypothetical protein.
       0.578
RAM_03385
CRP/FNR family transcriptional regulator; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
 
     0.540
RAM_37450
Chromosome partitioning protein ParB; COG1475 Predicted transcriptional regulators.
 
     0.517
RAM_25545
Glycosyl transferase.
  
     0.503
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.