STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03660COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family. (536 aa)    
Predicted Functional Partners:
RAM_03665
Integral membrane protein.
 
  
 0.831
RAM_03645
Hypothetical protein.
 
 
 0.752
AprE-2
COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
  
     0.729
RAM_08925
COG1404 Subtilisin-like serine proteases.
  
     0.701
FtsK
COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
 
 0.582
HscA
COG0443 Molecular chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.523
RAM_08365
COG0438 Glycosyltransferase.
  
     0.457
RAM_01200
Hypothetical protein.
 
 
 0.452
RAM_12110
Transmembrane protein.
  
     0.434
RAM_04085
COG0739 Membrane proteins related to metalloendopeptidases.
  
    0.424
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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