STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FtsKCOG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. (1337 aa)    
Predicted Functional Partners:
RAM_03645
Hypothetical protein.
 
 
 0.923
RAM_03665
Integral membrane protein.
 
 
 0.903
RAM_11430
Integral membrane protein.
 
 
 0.844
RAM_11445
Hypothetical protein.
 
 
 0.839
RAM_03685
COG4842 Uncharacterized protein conserved in bacteria; Belongs to the WXG100 family.
  
 
 0.835
RAM_03690
COG4842 Uncharacterized protein conserved in bacteria; Belongs to the WXG100 family.
 
 
 0.717
RAM_03660
COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
 
 
 0.619
HscA
COG0443 Molecular chaperone; Belongs to the heat shock protein 70 family.
 
  
 0.619
RAM_03635
Hypothetical protein.
 
 
 
 0.577
RAM_11340
Peptidase S8 and S53, subtilisin, kexin, sedolisin; COG1404 Subtilisin-like serine proteases.
 
 
 0.542
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.