STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03840Hypothetical protein. (169 aa)    
Predicted Functional Partners:
UgtP
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
     0.951
RAM_01660
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
     0.792
RAM_46715
Hypothetical protein.
  
     0.701
RAM_22055
Hypothetical protein.
  
     0.613
RAM_24540
COG1846 Transcriptional regulators.
  
     0.574
RAM_32255
Hypothetical protein.
  
     0.556
RAM_39035
Hypothetical protein.
  
     0.544
RAM_36075
COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
  
     0.534
RAM_47730
Hypothetical protein.
  
     0.512
RAM_11880
Hypothetical protein; COG0460 Homoserine dehydrogenase.
  
     0.486
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.