STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03850Amidase; COG3023 Negative regulator of beta-lactamase expression. (625 aa)    
Predicted Functional Partners:
RAM_43190
Hypothetical protein.
 
     0.761
RAM_44205
Hypothetical protein; COG0456 Acetyltransferases.
  
    0.508
RAM_46440
ArsR family transcriptional regulator.
  
     0.457
RAM_25220
Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
  
  
 0.453
RAM_30125
NLP/P60-family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
  
  
 0.453
RAM_18685
COG0640 Predicted transcriptional regulators.
  
     0.452
RAM_03855
Arsenite S-adenosylmethyltransferase; COG0500 SAM-dependent methyltransferases.
     
 0.443
RAM_38390
COG0640 Predicted transcriptional regulators.
  
     0.432
ArsR
COG0640 Predicted transcriptional regulators.
       0.430
RAM_22865
Hypothetical protein.
  
     0.410
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.