STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03960Cholesterol oxidase; COG2303 Choline dehydrogenase and related flavoproteins. (570 aa)    
Predicted Functional Partners:
RAM_12965
COG2124 Cytochrome P450.
     
 0.917
RAM_38570
Cholesterol oxidase; COG2303 Choline dehydrogenase and related flavoproteins.
  
  
 
0.910
RAM_07885
Cholesterol oxidase; COG2303 Choline dehydrogenase and related flavoproteins.
  
  
 
0.902
RAM_03965
Mycothiol-dependent maleylpyruvate isomerase.
       0.768
RAM_03970
COG0277 FAD/FMN-containing dehydrogenases.
     
 0.568
RAM_03955
Transcriptional regulator.
       0.521
RAM_18500
Hypothetical protein.
  
 
  0.458
RAM_17480
Hypothetical protein.
  
 
  0.447
RAM_03130
Hypothetical protein.
    
  0.407
RAM_09065
Hypothetical protein; COG2319 FOG: WD40 repeat.
    
  0.407
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.