STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03970COG0277 FAD/FMN-containing dehydrogenases. (501 aa)    
Predicted Functional Partners:
RAM_03960
Cholesterol oxidase; COG2303 Choline dehydrogenase and related flavoproteins.
     
 0.570
RAM_03965
Mycothiol-dependent maleylpyruvate isomerase.
       0.568
Hmd
COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
      0.485
FixA
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.452
FixB
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.452
NuoF-2
COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
   
   0.442
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.