STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_03990Hypothetical protein. (181 aa)    
Predicted Functional Partners:
RifB
COG3321 Polyketide synthase modules and related proteins.
 
 0.767
NuoF-2
COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
  
 0.767
RAM_20005
Polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.638
RAM_31455
COG5126 Ca2+-binding protein (EF-Hand superfamily).
   
 0.615
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
   0.582
RAM_39810
Hypothetical protein.
    
 0.578
RAM_16700
COG2940 Proteins containing SET domain.
    
 0.570
RifA
Rifamycin polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 0.554
HrpB
ATP-dependent helicase HrpB; COG1643 HrpA-like helicases.
    
 0.546
HrpA
COG1643 HrpA-like helicases.
    
 0.546
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.