STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04020Two-component system sensor kinase; COG1983 Putative stress-responsive transcriptional regulator. (433 aa)    
Predicted Functional Partners:
RAM_04025
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.963
PspA
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
 
 0.933
RAM_04005
COG1983 Putative stress-responsive transcriptional regulator.
 
    0.906
RAM_06705
Hypothetical protein.
  
  
 0.731
RAM_47760
Hypothetical protein.
 
    0.693
RAM_04505
COG4758 Predicted membrane protein.
 
    0.663
RAM_04070
Hypothetical protein.
  
    0.568
RAM_04010
3-ketoacyl-(acyl-carrier-protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.556
RAM_04015
3-ketoacyl-(acyl-carrier-protein) reductase.
       0.556
RAM_10400
Hypothetical protein.
 
  
 0.545
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.