Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DnaN | DnaN-2 | RAM_00010 | RAM_45335 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | 0.919 |
| DnaN | RAM_04155 | RAM_00010 | RAM_04155 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | 0.647 |
| DnaN | RAM_06255 | RAM_00010 | RAM_06255 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | COG0210 Superfamily I DNA and RNA helicases. | 0.953 |
| DnaN | dnaE2 | RAM_00010 | RAM_04165 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.755 |
| DnaN | dnaE2-2 | RAM_00010 | RAM_38270 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.755 |
| DnaN | recA | RAM_00010 | RAM_11920 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.875 |
| DnaN-2 | DnaN | RAM_45335 | RAM_00010 | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.919 |
| DnaN-2 | RAM_04155 | RAM_45335 | RAM_04155 | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | DNA polymerase; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | 0.647 |
| DnaN-2 | RAM_06255 | RAM_45335 | RAM_06255 | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | COG0210 Superfamily I DNA and RNA helicases. | 0.934 |
| DnaN-2 | dnaE2 | RAM_45335 | RAM_04165 | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.755 |
| DnaN-2 | dnaE2-2 | RAM_45335 | RAM_38270 | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.755 |
| DnaN-2 | recA | RAM_45335 | RAM_11920 | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.866 |
| RAM_04150 | RAM_04155 | RAM_04150 | RAM_04155 | Hypothetical protein. | DNA polymerase; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | 0.924 |
| RAM_04150 | dnaE2 | RAM_04150 | RAM_04165 | Hypothetical protein. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.871 |
| RAM_04150 | dnaE2-2 | RAM_04150 | RAM_38270 | Hypothetical protein. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.870 |
| RAM_04155 | DnaN | RAM_04155 | RAM_00010 | DNA polymerase; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.647 |
| RAM_04155 | DnaN-2 | RAM_04155 | RAM_45335 | DNA polymerase; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | COG0592 DNA polymerase sliding clamp subunit (PCNA homolog). | 0.647 |
| RAM_04155 | RAM_04150 | RAM_04155 | RAM_04150 | DNA polymerase; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | Hypothetical protein. | 0.924 |
| RAM_04155 | RAM_04160 | RAM_04155 | RAM_04160 | DNA polymerase; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | Hypothetical protein. | 0.773 |
| RAM_04155 | RAM_06255 | RAM_04155 | RAM_06255 | DNA polymerase; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | COG0210 Superfamily I DNA and RNA helicases. | 0.567 |
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