STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04295Hypothetical protein. (166 aa)    
Predicted Functional Partners:
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.780
RAM_04285
Hypothetical protein.
       0.623
OtsB
Trehalose-phosphatase/glycoside hydrolase; COG1877 Trehalose-6-phosphatase.
  
    0.545
RAM_14540
Hypothetical protein.
   
    0.457
RAM_04300
tRNA-processing ribonuclease BN; COG1295 Predicted membrane protein.
       0.433
CbiQ
Cobalt ABC transporter permease.
  
     0.427
RAM_22295
Two-component system sensor kinase; COG2203 FOG: GAF domain.
  
    0.406
RAM_31085
D-amino acid deaminase; COG3616 Predicted amino acid aldolase or racemase.
  
    0.403
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.