RAM_04320 protein (Amycolatopsis mediterranei)

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Score

RAM_04320

Integral membrane protein. (79 aa)

Predicted Functional Partners:

rpmB

0.942

rplU

0.942

rpsT

0.941

rplM

0.936

rpsL

0.934

rpmI

0.925

rpsP

0.915

rpmF

0.914

rpsK

0.909

rpsO

0.905

Your Current Organism:

Amycolatopsis mediterranei

NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RAM_04320	rplM	RAM_04320	RAM_03705	Integral membrane protein.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.936
RAM_04320	rplU	RAM_04320	RAM_34400	Integral membrane protein.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.942
RAM_04320	rpmB	RAM_04320	RAM_08890	Integral membrane protein.	COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.942
RAM_04320	rpmF	RAM_04320	RAM_09110	Integral membrane protein.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.914
RAM_04320	rpmI	RAM_04320	RAM_31045	Integral membrane protein.	COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.925
RAM_04320	rpsK	RAM_04320	RAM_03605	Integral membrane protein.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.909
RAM_04320	rpsL	RAM_04320	RAM_03435	Integral membrane protein.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.934
RAM_04320	rpsO	RAM_04320	RAM_32405	Integral membrane protein.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.905
RAM_04320	rpsP	RAM_04320	RAM_09930	Integral membrane protein.	COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.915
RAM_04320	rpsT	RAM_04320	RAM_34295	Integral membrane protein.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.941
rplM	RAM_04320	RAM_03705	RAM_04320	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Integral membrane protein.	0.936
rplM	rplU	RAM_03705	RAM_34400	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.994
rplM	rpmB	RAM_03705	RAM_08890	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.994
rplM	rpmF	RAM_03705	RAM_09110	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.992
rplM	rpmI	RAM_03705	RAM_31045	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.992
rplM	rpsK	RAM_03705	RAM_03605	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.998
rplM	rpsL	RAM_03705	RAM_03435	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.998
rplM	rpsO	RAM_03705	RAM_32405	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.995
rplM	rpsP	RAM_03705	RAM_09930	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rplM	rpsT	RAM_03705	RAM_34295	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.992

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