STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04395Hypothetical protein; COG0419 ATPase involved in DNA repair. (374 aa)    
Predicted Functional Partners:
RAM_03930
Hypothetical protein.
 
 
 
 0.806
RAM_46950
Hypothetical protein; COG0147 Anthranilate/para-aminobenzoate synthases component I.
 
 
   0.788
HscA
COG0443 Molecular chaperone; Belongs to the heat shock protein 70 family.
 
 0.780
RAM_09925
Integral membrane protein; COG1266 Predicted metal-dependent membrane protease.
 
   
 0.779
RAM_31290
Hypothetical protein.
 
 
 0.776
RAM_00655
Hypothetical protein.
  
     0.774
RAM_06010
Hypothetical protein.
  
     0.774
RAM_13030
Hypothetical protein.
  
     0.774
RAM_13035
Hypothetical protein.
  
     0.774
RAM_00800
Hypothetical protein; COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
 
    0.773
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.