STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adh-2COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases. (334 aa)    
Predicted Functional Partners:
SmoF
COG1175 ABC-type sugar transport systems, permease components.
 
     0.823
SmoE
COG1653 ABC-type sugar transport system, periplasmic component.
 
    0.812
SmoG
COG0395 ABC-type sugar transport system, permease component.
 
     0.810
RAM_04435
COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain.
 
     0.746
RAM_16640
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
 
0.455
RAM_30720
COG1454 Alcohol dehydrogenase, class IV.
  
 
 0.443
RAM_43205
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
 
0.426
GutB
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
 
0.420
RAM_29455
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
 
0.408
RAM_03980
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
 
0.402
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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