STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04485Hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family. (189 aa)    
Predicted Functional Partners:
RAM_46895
Hypothetical protein; COG2730 Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.714
RAM_07120
Carbohydrate-binding protein; COG2730 Endoglucanase.
 
     0.699
RAM_02890
Integral membrane protein.
 
    0.682
RAM_02840
Lipoprotein.
 
     0.625
RAM_24680
Lipoprotein.
 
     0.624
RAM_04480
Hypothetical protein.
       0.623
RAM_02865
Lipoprotein; COG3420 Nitrous oxidase accessory protein.
 
     0.617
RAM_40235
Carbohydrate-binding protein.
 
     0.616
RAM_02880
Hypothetical protein.
 
    0.608
RAM_02815
Exopolysaccharide biosynthesis protein.
  
     0.604
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.