STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04545COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases). (325 aa)    
Predicted Functional Partners:
RAM_04540
COG0789 Predicted transcriptional regulators.
  
    0.787
RAM_04555
(S)-2-hydroxy-acid oxidase; COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
   
 
 0.635
RAM_04535
COG1309 Transcriptional regulator.
       0.560
RAM_04550
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COG0492 Thioredoxin reductase.
       0.547
RAM_04560
COG2124 Cytochrome P450.
       0.547
RAM_04565
Cation:proton antiporter; COG0475 Kef-type K+ transport systems, membrane components.
       0.547
RAM_33135
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
 
0.491
RAM_04570
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.424
RAM_04575
COG0642 Signal transduction histidine kinase.
       0.424
RAM_25335
COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
 
 0.413
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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