STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04595Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases. (388 aa)    
Predicted Functional Partners:
RAM_04600
Hypothetical protein.
 
     0.850
RAM_04605
Hypothetical protein.
 
     0.829
RAM_04610
Hypothetical protein; COG1396 Predicted transcriptional regulators.
 
     0.825
RAM_38610
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.764
RAM_43440
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.764
RAM_33000
Amidohydrolase-related protein; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.757
RAM_09915
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.694
hisS
COG0124 Histidyl-tRNA synthetase.
 
     0.581
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.566
RAM_04590
Hypothetical protein.
       0.558
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.