STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04610Hypothetical protein; COG1396 Predicted transcriptional regulators. (142 aa)    
Predicted Functional Partners:
RAM_04605
Hypothetical protein.
 
  
 0.946
RAM_04600
Hypothetical protein.
 
     0.903
RAM_04595
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
 
     0.825
RAM_09135
Hypothetical protein.
 
  
 0.779
RAM_10175
Hypothetical protein.
 
  
 0.772
RAM_23215
Hypothetical protein.
 
  
 0.771
RAM_36450
Hypothetical protein.
 
  
 0.761
RAM_09140
Hypothetical protein.
 
     0.726
RAM_10170
Hypothetical protein.
 
     0.591
hisS
COG0124 Histidyl-tRNA synthetase.
 
     0.569
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.