STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04635Hypothetical protein. (139 aa)    
Predicted Functional Partners:
RAM_04640
Hypothetical protein.
 
     0.927
PunA
COG0005 Purine nucleoside phosphorylase.
       0.795
RAM_04645
COG0789 Predicted transcriptional regulators.
 
     0.745
RAM_11375
Hypothetical protein.
 
     0.699
RAM_20775
COG2324 Predicted membrane protein.
  
     0.505
RAM_00100
NTPase-like protein probably invoved in signal transduction; COG5635 Predicted NTPase (NACHT family).
  
     0.502
RAM_39245
Hypothetical protein.
 
     0.463
RAM_14615
COG2124 Cytochrome P450.
  
     0.441
RAM_17070
Metallocarboxypeptidase of M14 family protein; COG2866 Predicted carboxypeptidase.
  
     0.418
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.